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Table 1 Sequence identities of the nucleocapsid gene between ECoVs identified in this study and other ECoVs

From: Low prevalence of equine coronavirus in foals in the largest thoroughbred horse breeding region of Japan, 2012–2014

Strains Hidaka-No.61/2012 Hidaka-No.119/2012
Nucleotide (nt) Amino acid (aa) Nucleotide Amino acid
NC99 98.2 % (1317/1341nt) 97.3 % (434/446aa) 97.8 % (1311/1341nt) 96.6 % (431/446aa)
Obihiro2004 98.5 % (1321/1341nt) 97.5 % (435/446aa) 98.2 % (1317/1341nt) 97.1 % (433/446aa)
Tokachi09 99.3 % (1331/1341nt) 98.9 % (441/446aa) 99.1 % (1329/1341nt) 98.7 % (440/446aa)
Obihiro12-1 99.9 % (1340/1341nt) 100 % (446/446aa) 99.2 % (1330/1341nt) 98.9 % (441/446aa)