Table 1 Bacterial and fungal strains used for inclusivity and exclusivity testing of the developed real-time PCR assay
Organism | Strain |
|---|---|
Dichelobacter nodosus | CCUG 27824T |
Dichelobacter nodosus | AN363/05 |
Dichelobacter nodosus | AN484/05 |
Dichelobacter nodosus | 07-BKT18497 |
Dichelobacter nodosus | 07-BKT21558 |
Dichelobacter nodosus | 07-BKT22285 |
Dichelobacter nodosus | 07-BKT24952 |
Dichelobacter nodosus | 08-BKT63297 |
Dichelobacter nodosus | 09-BKT91977(5) |
Dichelobacter nodosus | 09-BKT94362(4) |
Actinobacillus pleuropneumoniae | CCUG 12837 |
Bacillus anthracis | 7702 |
Bacillus anthracis | 4429 |
Bacillus cereus | B. cereus |
Campylobacter coli | SLV-271 |
Campylobacter jejuni | SLV-542 |
Enterobacter cloacae | SLV-011 |
Enterococcus durans | SLV-078 |
Escherichia coli | U226 |
Escherichia coli | B266 |
Escherichia coli | L278 |
Escherichia coli | UM245 |
Escherichia coli | S262 |
Escherichia coli | XL-1 blue |
Escherichia coli EIEC | 121 |
Escherichia coli O113:H21 | 98NK2 |
Escherichia coli O157 | SLV-479 |
Escherichia coli O157 | EDL933 |
Escherichia coli O157:H- | 493/89 |
Escherichia coli O26:H11 | H2954/06 |
Francisella tularensis | T8 |
Fusarium culmorum | F.c |
Fusarium graminearum | F.g |
Fusobacterium necrophorum subsp. funduliforme | CCUG 42162 |
Fusobacterium necrophorum subsp. necrophorum | CCUG 9994 |
Haemophilus influenzae | ATCC 49247 |
Histophilus somni | CCUG 28029 |
Klebsiella pneumoniae | SLV-186 |
Listeria ivanovii | SLV-348 |
Listeria monocytogenes | SLV-513 |
Proteus mirabilis | SLV-374 |
Pseudomonas aeruginosa | SLV-395 |
Pseudomonas aeruginosa | SLV-453 |
Salmonella Dublin | SLV-242 |
Salmonella Typhimurium | SLV-248 |
Shigella boydii | 33/08 |
Shigella dysenterieae | 15/08 |
Shigella flexneri | 100/08 |
Shigella sonnei | 99/08 |
Staphylococcus aureus | SLV-438 |
Staphylococcus xylosus | SLV-283 |
Vibrio cholerae | CCUG 4070 |
Vibrio parahaemolyticus | CCUG 4224 |
Vibro vulnificus | CCUG 16397 |
Yersinia enterocolitica | SLV-408 |
Yersinia pestis | KIM |
Yersinia pseudotuberculosis | TAVA81 |