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Table 1 Primers used in this study

From: Isolation and molecular characterization of multidrug-resistant Gram-negative bacteria from imported flamingos in Japan

Primer

Sequence (5' to 3')

Target

Reference

Integrons

   

5'-CS

3'-CS

GGCATCCAAGCAGCAAG

AAGCAGACTTGACCTGA

Class 1 integron

11

hep74

hep51

CGGGATCCCGGACGGCATGCACGATTTGTA

GATGCCATCGCAAGTACGAG

Class 2 integron

11

β-Lactamases

   

TEM-F

TEM-R

ATAAAATTCTTGAAGACGAAA

GACAGTTACCAATGCTTAATC

bla TEM

11

SHV-F

SHV-R

TT ATCTCCCTGTTAGCCACC

GATTTGCTGATTTCGCTCGG

bla SHV

11

OXA-F

OXA-R

TCAACTTTCAAGATCGCA

GTGTGTTTAGAATGGTGA

bla OXA

11

CTX-M-F

CTX-M-R

CGCTTTGCGATGTGCAG

ACCGCGATATCGTTGGT

bla CTX-M

11

CTX-M-F2

CTX-M-R2

CCAGAATAAGGAATCCCATG

GCCGTCTAAGGCGATAAAC

whole blaCTX-M

11

CMY-F

CMY-R

GACAGCCTCTTTCTCCACA

TGGAACGAAGGCTACGTA

bla CMY

11

Plasmid-mediated quiniolone resistance

   

qnrA-F

qnrA-R

ATTTCTCACGCCAGGATTTG

GATCGGCAAAGGTTAGGTCA

qnrA

19

qnrB-F

qnrB-R

GATCGTGAAAGCCAGAAAGG ACGATGCCTGGTAGTTGTCC

qnrB

19

qnrS-F

qnrS-R

ACGACATTCGTCAACTGCAA TAAATTGGCACCCTGTAGGC

qnrS

19