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IS900 Restriction Fragment Length Polymorphism (RFLP) Analysis of Mycobacterium avium subsp. paratuberculosisIsolates from Goats and Cattle in Norway
Acta Veterinaria Scandinavica volume 46, Article number: 13 (2005)
In Norway, paratuberculosis has been frequently diagnosed in goats, while cattle have been almost free of the infection. This difference in prevalence between goats and cattle has led to speculations about the existence of a Mycobacterium avium subsp. paratuberculosis (M. a. paratuberculosis) isolate that is non-pathogenic for cattle. There is little information available on genotypic variation of M. a. paratuberculosis isolated from animals in Norway. In the present study, genotypic information on 51 isolates from goats and four isolates from cattle in Norway was obtained by use of IS900 restriction fragment length polymorphism (RFLP) analysis. All isolates from cattle and 84% of the isolates from goats had the same RFLP pattern (B-C1). Five RFLP patterns not previously detected were found. No genotypic variation that could explain a difference in host origin was found between the isolates from cattle and the majority of the Norwegian goat isolates. This lack of difference indicates that the most common M. a. paratuberculosis isolates in Norway may infect both cattle and goats.
Genotypisk variasjon mellom Mycobacterium avium subsp. paratuberculosis isolat fra geit og storfe i Norge.
Paratuberkulose er relativt vanlig på geit i Norge, mens storfe derimot har vært nærmest fri for infeksjonen. Denne ulikheten i forekomst av paratuberkulose har ført til spekulasjoner om det finnes en strikt geitepatogen stamme av Mycobacterium avium subsp. paratuberculosis i Norge. Det er lite informasjon tilgjengelig om genotypisk variasjon mellom stammer av M. a. paratuberculosis isolert fra dyr i Norge. I dette arbeidet benyttes RFLP metoden til genotypisk karakterisering av 51 isolat fra Norske geiter og 4 isolat fra Norske storfe. Alle isolat fra storfe og 84% av isolatene fra geit hadde samme RFLP mønster (B-C1). Fem isolat hadde RFLP mønster som ikke tidligere er blitt funnet. Det ble ikke funnet genotypisk variasjon mellom isolatene fra storfe og majoriteten av isolatene fra geit, dette kan tyde på at den mest vanlige M. a. paratuberculosis stammen i Norge kan infisere både geit og storfe.
Paratuberculosis is a chronic intestinal inflammation in ruminants caused by Mycobacterium avium subsp. paratuberculosis (M. a. paratuberculosis). The infection is widely distributed in domestic cattle, sheep and goats, and the prevalence varies in different parts of the world .
In Norway, paratuberculosis has been quite common in goats, whereas cattle have been almost free of the infection. From 1966 to 2000, M. a. paratuberculosis was isolated in 898 goats from 186 different herds. During the same period, M. a. paratuberculosis was isolated only in 20 cattle on 12 different farms . The different prevalence of the infection in goats and cattle has led to speculations about the existence of M. a. paratuberculosis strains that are non-pathogenic for cattle.  carried out an experimental infection where M. a. paratuberculosis isolated from Norwegian goats was administered to cattle. Based on the results of this trial, it was concluded that paratuberculosis in goats in Norway is caused by an apparently specific goat-pathogenic strain of the bacterium.
Variation in virulence between different isolates of a bacterial species can be caused by genetic variation that is detected by phenotypic or genotypic characterisation. M. a. paratuberculosis strains from Norwegian goats do not differ phenotypically from strains isolated from cattle in Norway or other parts of the world . There is little information available on the genotypic variation of M. a. paratuberculosis isolated from animals in Norway.  performed genotypic examinations of three M. a. paratuberculosis isolates originating from Norwegian goats. Two of these showed marked differences from the 48 other strains from sheep, goat and cattle examined, in that they lacked a repetitive M. a. paratuberculosis sequence and also showed a very different restriction fragment pattern compared with the other strains . Thus, the authors suggested that these Norwegian strains might be uniquely adapted to goats. In other studies, however, only minor genotypic differences between Norwegian goat isolates and strains isolated from cattle in other parts of Europe have been found [25, 16]. Molecular typing has shown that, in comparison with other pathogens, there is relatively little genetic variability in M. a. paratuberculosis . Therefore, the potential of many different methods, such as IS900 restriction fragment length polymorphism (RFLP) [26, 2, 15], pulsed-field gel electrophoresis (PFGE) [5, 24], random amplified polymorphic DNA patterns [22, 18], and multiplex PCR typing  have been investigated. RFLP has been found to be one of the best methods to differentiate between M. a. paratuberculosis isolates, and many different RFLP patterns have been found [26, 2, 15, 12, 17, 3, 27]. In 1999,  standardised the RFLP typing and nomenclature of the RFLP types, enabling a comparison of isolates from different parts of the world.
The aim of the present study was to investigate the genotypic variation among M. a. paratuberculosis isolates from goats and cattle in Norway, by use of IS900 RFLP analysis.
Materials and methods
M. a. paratuberculosis strains
Fifty-one M. a. paratuberculosis strains from goats and four from cattle were examined; they originated from 51 goat and four cattle herds, and were collected during the period 1983–2000. The goatherds were distributed in Western Norway. Three cattle herds located in Eastern Norway had imported animals from Denmark and Finland in 1993, and the fourth cattle herd, located in Western Norway, had previously had goats with paratuberculosis. From most of these herds, M. a. paratuberculosis was isolated more than once, but in this study, only the last detected isolate from each herd was included. From the combined cattle and goatherd, one isolate from cattle and one isolate from goat were included. The strains were isolated from either clinically ill animals or animals in the subclinical stages of paratuberculosis.
M. a. paratuberculosis isolation and identification
The M. a. paratuberculosis strains examined were either fresh or low passage number isolates. They had primarily been isolated after cultivation on selective and non-selective Dubos medium with mycobactin (2 μg/ml) and pyruvate (4 mg/ml) as described by . At the time of isolation, the isolates were identified by colony morphology, degree of acid-fast staining with the Ziehl-Neelsen method and mycobactin dependency. All isolates were nonpigmented and were stored as glycerol stocks at -70°C. Before further examination, the isolates were confirmed as M. a. paratuberculosis by detection of the insertion segment IS900 by PCR .
IS900 restriction fragment length polymorphism analysis (RFLP)
RFLP analysis was performed as described by . Briefly, DNA was extracted from the isolates with lysozyme, sodium dodecyl sulfate and proteinase K, purified by chloroform isoamylalcohol extraction and precipitated with isopropylalcohol. The DNA was digested by restriction endonucleases PstI and BstEII and hybridised with a standard PCR generated IS900 probe. The DNA fingerprints were analysed and the types were designated as described by . The fingerprints were scanned by a CCD camera (UltraLum KS4000, USA), and analysed by Gel Compare software (Applied Maths, Kortrijk, Belgium).
Three different profiles were detected when using restriction endonuclease PstI (B, N and O) whereas five profiles were found with BstEII (C1, C5, C20, C24 and C26) (Figure 1). The combination of typing with PstI and BstEII was able to differentiate seven RFLP types (Table 1). All the cattle isolates and 43 goat isolates were type B-C1. Other identified RFLP types were B-C5 (n = 2), B-C24 (n = 1), B-C26 (n = 1), N-C20 (n = 2), O-C5 (n = 1) and O-C24 (n = 1).
In the present study, all M. a. paratuberculosis isolates from cattle and 84% of the isolates from goats in Norway were of the B-C1 RFLP pattern. Four cattle isolates are very few, but B-C1 is also the most common RFLP pattern detected in cattle in Europe and the United States [26, 17]. The B-C1 type was distributed throughout the area where paratuberculosis in goats is common. Five RFLP types found in the present study have not yet been described; these types were O-C24, O-C5, B-C26, N-C20 and B-C24. However, only minor differences in the RFLP patterns were found for these types, and the difference was usually the absence or gain of one band. Except for B-C5 and N-C20, only one isolate of each RFLP type was found. The two N-C20 isolates were from the same district, while the two B-C5 isolates were from two different counties.
RFLP analysis with other restriction enzymes might have enabled a better differentiation of the Norwegian isolates.  examined Australian M. a. paratuberculosis isolates with four different restriction endonucleases, and some additional information was gathered by using the restriction endonucleases BamHI and PvuII in combination with BstEII and PstI.
 used RFLP with restriction endonuclease PvuII to analyse 16 isolates from Norwegian goats and five isolates from Danish cattle. All but one goat isolate had the same RFLP pattern. These results are in accordance with the results reported in the present investigation, where the majority of the isolates were identical to the most common isolates from European cattle, although some variation between the different isolates was found.  examined two Norwegian isolates that differed in many aspects from the majority of other M. a. paratuberculosis isolates. These strains were so different that it was concluded they might belong to another species.
Other typing methods might have enabled a better differentiation of the isolates. Pulsed-field gel electrophoresis [5, 24] has been used to differentiate between isolates of M. a. paratuberculosis.  found that multiplex PFGE gave additional information to RFLP, and they concluded that combining both techniques might improve the discrimination of M. a. paratuberculosis isolates.
Our investigation did not detect any genotypic variation between the isolates from cattle and the majority of the Norwegian goat isolates. This lack of genetic variation may indicate that the most common strain of M. a. paratuberculosis in Norway is able to infect both cattle and goats. This finding is in accordance with observations from other countries, where M. a. paratuberculosis isolates from one animal species are known to infect others. In the Netherlands, sheep grazing on the same pastures as cattle infected by M. a. paratuberculosis were also found to be infected . In Iceland and the Czech Republic, infection from sheep to cattle has been reported [15, 6, 28], and in the Czech Republic transmission of M. a. paratuberculosis from pastured cattle to free living wild ruminants has been documented . Our observations do not exclude that these M. a. paratuberculosis isolates have different pathogenicity for cattle and goats, as RFLP might not detect the genetic background for this difference. However, there are factors other than strain specificities that should be considered when evaluating the pathogenicity of M. a. paratuberculosis for cattle and goats. These factors include management conditions and breed resistance. The management conditions are quite different for cattle and goats in Norway; small cattle units, early separation of calves from their mothers, and a low average age of the cows . All of these management factors have been shown to reduce the spread of infection in a herd [9, 14, 19]. The goat kids, however, are often born in pens where several goats are housed, and they might suckle several dams. Therefore, the risk of being exposed to faecal material from a bacterial shedder are higher in goats than in cattle.
Paratuberculosis was considered to be a clinical problem in the Norwegian cattle population during the first part of the 20th century. At that time, different local cattle breeds made up the cattle population in Norway. After 1970, the majority of the population was drawn from the Norwegian red cattle breed, which is a hybrid of many different breeds, and speculations that the Norwegian red cattle breed is more resistant to clinical infection with M. a. paratuberculosis than the local breeds have been put forward .
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We thank Dr. Finn Saxegaard, Sigrun Frensvold Nilsen and Nina Fundingsrud for isolating M. a. paratuberculosis.
Reprints may be obtained from: B. Djønne, National Veterinary Institute, PO Box 8156 Dep., N-0033 OSLO, Norway. E-mail: firstname.lastname@example.org, tel: +47 23 21 63 23, fax: +47 23 21 63 01.
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Djønne, B., Pavlik, I., Svastova, P. et al. IS900 Restriction Fragment Length Polymorphism (RFLP) Analysis of Mycobacterium avium subsp. paratuberculosisIsolates from Goats and Cattle in Norway. Acta Vet Scand 46, 13 (2005). https://0-doi-org.brum.beds.ac.uk/10.1186/1751-0147-46-13
- Mycobacterium avium subsp. paratuberculosis
- Strain characterisation
- RFLP fingerprint